Target prediction and correlation with expression data

mimiRNA

Additional Info

Exprtargetdb

Additional Info

  • Activitiy Active
  • Description
    ExprTarget integrate some of the most frequently used miRNA target prediction methods as well as the expression datasets on HapMap cell lines generated in our laboratory. This database conducted an analysis of its performance using the database of experimentally supported miRNA targets as gold standard and using cross-validation. This approach greatly improves miRNA target prediction relative to the existing prediction algorithms.
  • Main feature Correlation of target prediction and expression
  • Unique features
    Integrating Miranda, PicTar and TargetScan miRNA target prediction methods with the mRNA and miRNA expression datasets from HapMap cell lines
  • Organism Human
  • Category Target prediction correlated with expression data
  • Last observe Monday, 29 August 2016
  • Year published 2010
  • Citations per year 6.83
  • Last update Thursday, 21 October 2010
  • Updated over past 3 years No
  • Relative Popularity 1151659

HocTar

Additional Info

  • Activitiy Active
  • Description
    The HOCTAR (Host gene Opposite Correlated TARgets) tool is a new procedure to improve the prediction of miRNA targets. The HOCTAR procedure is based on the integration of expression profiling and sequence-based miRNA target recognition softwares. HOCTAR re-analyzes all miRNA target predictions generated by softwares such as miRanda, TargetScan and PicTar.
  • Main feature Correlation of target prediction and expression
  • Unique features
    Integrating Miranda, TargetScan and PicTar predictions with expression results
  • Organism Human
  • Category Target prediction correlated with expression data
  • Other covered categories
    Composite target prediction
  • Last observe Thursday, 01 September 2016
  • Year published 2011
  • Citations per year 3.8
  • Last update Wednesday, 13 October 2010
  • Updated over past 3 years No
  • Relative Popularity 1410127

miRonTop

Additional Info

  • Activitiy Active
  • Description
    MiRonTop is an online tool that integrates DNA microarrays or high-throughput sequencing data to identify the potential implication of miRNAs on a specific biological system. It allows a rapid characterization of the most pertinent mRNA targets according to several existing miRNA target prediction approaches. It usesTargetScan v7.0 and miRTarBase v6.0 algorithms.
  • Main feature Correlation of target prediction and expression
  • Unique features
    Integrating next generation sequencing data and several miRNA target prediction approaches.
  • Organism Human, Mouse, Rat
  • Category Target prediction correlated with expression data
  • Last observe Friday, 26 August 2016
  • Year published 2010
  • Citations per year 5.66
  • Last update Saturday, 01 August 2015
  • Updated over past 3 years Yes
  • Relative Popularity 0

MMIA

Additional Info

  • Activitiy Active
  • Description
    MMIAs is microRNA and mRNA integrated analysis that integrates microRNA and mRNA expression data with predicted microRNA target information for analyzing microRNA-associated phenotypes and biological functions. To assign biological relevance to the integrated microRNA/mRNA profiles, MMIA uses exhaustive human genome coverage, including various disease-associated genes as well as conventional canonical pathways and Gene Ontology.
  • Main feature Correlation of target prediction and expression
  • Unique features
    Combining expression profiles and TargetScan, PicTar and PITA miRNA predictions
  • Organism Human
  • Category Target prediction correlated with expression data
  • Other covered categories
    miRNA roles in diseases
  • Last observe Wednesday, 31 August 2016
  • Year published 2009
  • Citations per year 12.71
  • Last update Tuesday, 14 April 2009
  • Updated over past 3 years No
  • Relative Popularity 0

TaLasso

Additional Info

  • Activitiy Active
  • Description
    TaLasso was used on two public datasets that have paired expression levels of human miRNAs and mRNAs. The top ranked interactions recovered by TaLasso are especially enriched (more than using any other algorithm) in experimentally validated targets. The functions of the genes with mRNA transcripts in the top-ranked interactions are meaningful.
  • Main feature Human Correlation of mRNA and miRNA expression
  • Unique features
    Combines the information of sequence databases with mRNA and miRNA expression to quantify the down-regulation between miRNAs and their putative targets
  • Organism Human
  • Category Target prediction correlated with expression data
  • Last observe Monday, 29 August 2016
  • Year published 2012
  • Citations per year 6.25
  • Last update Tuesday, 14 February 2012
  • Updated over past 3 years No
  • Relative Popularity 24948